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https://github.com/penpot/penpot.git
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The main issue was the long running gc operation that affects storage objects with deduplication. The long running transacion ends locking some storage object rows which collaterally made operations like import-binfile become blocked indefinitelly because of the same rows (because of deduplication). The solution used in this commit is split operations on small chunks so we no longer use long running transactions that holds too many locks. With this approach we will make a window to work concurrently all operarate the distinct operations that requires locks on the same rows.
319 lines
11 KiB
Clojure
319 lines
11 KiB
Clojure
;; This Source Code Form is subject to the terms of the Mozilla Public
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;; License, v. 2.0. If a copy of the MPL was not distributed with this
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;; file, You can obtain one at http://mozilla.org/MPL/2.0/.
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;;
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;; Copyright (c) KALEIDOS INC
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(ns app.tasks.objects-gc
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"A maintenance task that performs a general purpose garbage collection
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of deleted or unreachable objects."
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(:require
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[app.common.logging :as l]
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[app.config :as cf]
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[app.db :as db]
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[app.media :as media]
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[app.storage :as sto]
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[app.util.time :as dt]
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[clojure.spec.alpha :as s]
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[integrant.core :as ig]))
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(def ^:private sql:get-profiles
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"SELECT id, photo_id FROM profile
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WHERE deleted_at IS NOT NULL
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AND deleted_at < now() - ?::interval
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ORDER BY deleted_at ASC
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LIMIT ?
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FOR UPDATE
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SKIP LOCKED")
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(defn- delete-profiles!
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[{:keys [::db/conn ::min-age ::chunk-size ::sto/storage] :as cfg}]
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(->> (db/cursor conn [sql:get-profiles min-age chunk-size] {:chunk-size 1})
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(reduce (fn [total {:keys [id photo-id]}]
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(l/trc :hint "permanently delete" :rel "profile" :id (str id))
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;; Mark as deleted the storage object
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(some->> photo-id (sto/touch-object! storage))
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;; And finally, permanently delete the profile. The
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;; relevant objects will be deleted using DELETE
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;; CASCADE database triggers. This may leave orphan
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;; teams, but there is a special task for deleting
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;; orphaned teams.
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(db/delete! conn :profile {:id id})
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(inc total))
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0)))
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(def ^:private sql:get-teams
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"SELECT deleted_at, id, photo_id FROM team
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WHERE deleted_at IS NOT NULL
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AND deleted_at < now() - ?::interval
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ORDER BY deleted_at ASC
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LIMIT ?
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FOR UPDATE
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SKIP LOCKED")
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(defn- delete-teams!
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[{:keys [::db/conn ::min-age ::chunk-size ::sto/storage] :as cfg}]
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(->> (db/cursor conn [sql:get-teams min-age chunk-size] {:chunk-size 1})
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(reduce (fn [total {:keys [id photo-id deleted-at]}]
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(l/trc :hint "permanently delete"
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:rel "team"
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:id (str id)
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:deleted-at (dt/format-instant deleted-at))
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;; Mark as deleted the storage object
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(some->> photo-id (sto/touch-object! storage))
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;; And finally, permanently delete the team.
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(db/delete! conn :team {:id id})
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(inc total))
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0)))
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(def ^:private sql:get-fonts
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"SELECT id, team_id, deleted_at, woff1_file_id, woff2_file_id, otf_file_id, ttf_file_id
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FROM team_font_variant
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WHERE deleted_at IS NOT NULL
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AND deleted_at < now() - ?::interval
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ORDER BY deleted_at ASC
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LIMIT ?
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FOR UPDATE
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SKIP LOCKED")
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(defn- delete-fonts!
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[{:keys [::db/conn ::min-age ::chunk-size ::sto/storage] :as cfg}]
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(->> (db/cursor conn [sql:get-fonts min-age chunk-size] {:chunk-size 1})
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(reduce (fn [total {:keys [id team-id deleted-at] :as font}]
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(l/trc :hint "permanently delete"
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:rel "team-font-variant"
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:id (str id)
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:team-id (str team-id)
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:deleted-at (dt/format-instant deleted-at))
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;; Mark as deleted the all related storage objects
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(some->> (:woff1-file-id font) (sto/touch-object! storage))
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(some->> (:woff2-file-id font) (sto/touch-object! storage))
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(some->> (:otf-file-id font) (sto/touch-object! storage))
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(some->> (:ttf-file-id font) (sto/touch-object! storage))
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;; And finally, permanently delete the team font variant
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(db/delete! conn :team-font-variant {:id id})
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(inc total))
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0)))
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(def ^:private sql:get-projects
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"SELECT id, deleted_at, team_id
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FROM project
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WHERE deleted_at IS NOT NULL
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AND deleted_at < now() - ?::interval
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ORDER BY deleted_at ASC
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LIMIT ?
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FOR UPDATE
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SKIP LOCKED")
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(defn- delete-projects!
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[{:keys [::db/conn ::min-age ::chunk-size] :as cfg}]
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(->> (db/cursor conn [sql:get-projects min-age chunk-size] {:chunk-size 1})
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(reduce (fn [total {:keys [id team-id deleted-at]}]
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(l/trc :hint "permanently delete"
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:rel "project"
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:id (str id)
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:team-id (str team-id)
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:deleted-at (dt/format-instant deleted-at))
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;; And finally, permanently delete the project.
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(db/delete! conn :project {:id id})
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(inc total))
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0)))
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(def ^:private sql:get-files
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"SELECT id, deleted_at, project_id
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FROM file
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WHERE deleted_at IS NOT NULL
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AND deleted_at < now() - ?::interval
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ORDER BY deleted_at ASC
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LIMIT ?
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FOR UPDATE
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SKIP LOCKED")
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(defn- delete-files!
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[{:keys [::db/conn ::min-age ::chunk-size] :as cfg}]
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(->> (db/cursor conn [sql:get-files min-age chunk-size] {:chunk-size 1})
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(reduce (fn [total {:keys [id deleted-at project-id]}]
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(l/trc :hint "permanently delete"
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:rel "file"
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:id (str id)
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:project-id (str project-id)
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:deleted-at (dt/format-instant deleted-at))
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;; And finally, permanently delete the file.
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(db/delete! conn :file {:id id})
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(inc total))
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0)))
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(def ^:private sql:get-file-thumbnails
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"SELECT file_id, revn, media_id, deleted_at
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FROM file_thumbnail
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WHERE deleted_at IS NOT NULL
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AND deleted_at < now() - ?::interval
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ORDER BY deleted_at ASC
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LIMIT ?
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FOR UPDATE
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SKIP LOCKED")
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(defn delete-file-thumbnails!
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[{:keys [::db/conn ::min-age ::chunk-size ::sto/storage] :as cfg}]
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(->> (db/cursor conn [sql:get-file-thumbnails min-age chunk-size] {:chunk-size 1})
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(reduce (fn [total {:keys [file-id revn media-id deleted-at]}]
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(l/trc :hint "permanently delete"
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:rel "file-thumbnail"
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:file-id (str file-id)
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:revn revn
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:deleted-at (dt/format-instant deleted-at))
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;; Mark as deleted the storage object
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(some->> media-id (sto/touch-object! storage))
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;; And finally, permanently delete the object
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(db/delete! conn :file-thumbnail {:file-id file-id :revn revn})
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(inc total))
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0)))
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(def ^:private sql:get-file-object-thumbnails
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"SELECT file_id, object_id, media_id, deleted_at
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FROM file_tagged_object_thumbnail
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WHERE deleted_at IS NOT NULL
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AND deleted_at < now() - ?::interval
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ORDER BY deleted_at ASC
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LIMIT ?
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FOR UPDATE
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SKIP LOCKED")
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(defn delete-file-object-thumbnails!
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[{:keys [::db/conn ::min-age ::chunk-size ::sto/storage] :as cfg}]
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(->> (db/cursor conn [sql:get-file-object-thumbnails min-age chunk-size] {:chunk-size 1})
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(reduce (fn [total {:keys [file-id object-id media-id deleted-at]}]
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(l/trc :hint "permanently delete"
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:rel "file-tagged-object-thumbnail"
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:file-id (str file-id)
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:object-id object-id
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:deleted-at (dt/format-instant deleted-at))
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;; Mark as deleted the storage object
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(some->> media-id (sto/touch-object! storage))
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;; And finally, permanently delete the object
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(db/delete! conn :file-tagged-object-thumbnail {:file-id file-id :object-id object-id})
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(inc total))
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0)))
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(def ^:private sql:get-file-data-fragments
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"SELECT file_id, id, deleted_at
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FROM file_data_fragment
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WHERE deleted_at IS NOT NULL
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AND deleted_at < now() - ?::interval
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ORDER BY deleted_at ASC
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LIMIT ?
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FOR UPDATE
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SKIP LOCKED")
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(defn- delete-file-data-fragments!
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[{:keys [::db/conn ::min-age ::chunk-size] :as cfg}]
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(->> (db/cursor conn [sql:get-file-data-fragments min-age chunk-size] {:chunk-size 1})
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(reduce (fn [total {:keys [file-id id deleted-at]}]
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(l/trc :hint "permanently delete"
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:rel "file-data-fragment"
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:id (str id)
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:file-id (str file-id)
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:deleted-at (dt/format-instant deleted-at))
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(db/delete! conn :file-data-fragment {:file-id file-id :id id})
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(inc total))
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0)))
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(def ^:private sql:get-file-media-objects
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"SELECT id, file_id, media_id, thumbnail_id, deleted_at
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FROM file_media_object
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WHERE deleted_at IS NOT NULL
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AND deleted_at < now() - ?::interval
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ORDER BY deleted_at ASC
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LIMIT ?
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FOR UPDATE
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SKIP LOCKED")
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(defn- delete-file-media-objects!
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[{:keys [::db/conn ::min-age ::chunk-size ::sto/storage] :as cfg}]
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(->> (db/cursor conn [sql:get-file-media-objects min-age chunk-size] {:chunk-size 1})
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(reduce (fn [total {:keys [id file-id deleted-at] :as fmo}]
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(l/trc :hint "permanently delete"
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:rel "file-media-object"
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:id (str id)
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:file-id (str file-id)
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:deleted-at (dt/format-instant deleted-at))
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;; Mark as deleted the all related storage objects
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(some->> (:media-id fmo) (sto/touch-object! storage))
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(some->> (:thumbnail-id fmo) (sto/touch-object! storage))
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(db/delete! conn :file-media-object {:id id})
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(inc total))
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0)))
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(def ^:private deletion-proc-vars
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[#'delete-file-media-objects!
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#'delete-file-data-fragments!
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#'delete-file-object-thumbnails!
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#'delete-file-thumbnails!
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#'delete-files!
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#'delete-projects!
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#'delete-fonts!
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#'delete-teams!
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#'delete-profiles!])
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(defn- execute-proc!
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"A generic function that executes the specified proc iterativelly
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until 0 results is returned"
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[cfg proc-fn]
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(loop [total 0]
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(let [result (db/tx-run! cfg (fn [{:keys [::db/conn] :as cfg}]
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(db/exec-one! conn ["SET LOCAL rules.deletion_protection TO off"])
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(proc-fn cfg)))]
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(if (pos? result)
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(recur (+ total result))
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total))))
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(defmethod ig/pre-init-spec ::handler [_]
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(s/keys :req [::db/pool ::sto/storage]))
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(defmethod ig/prep-key ::handler
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[_ cfg]
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(assoc cfg
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::min-age cf/deletion-delay
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::chunk-size 10))
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(defmethod ig/init-key ::handler
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[_ cfg]
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(fn [params]
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(let [min-age (dt/duration (or (:min-age params) (::min-age cfg)))
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cfg (-> cfg
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(assoc ::min-age (db/interval min-age))
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(update ::sto/storage media/configure-assets-storage))]
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(loop [procs (map deref deletion-proc-vars)
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total 0]
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(if-let [proc-fn (first procs)]
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(let [result (execute-proc! cfg proc-fn)]
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(recur (rest procs)
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(+ total result)))
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(do
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(l/inf :hint "task finished" :deleted total)
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{:processed total}))))))
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